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1

Bacterial RNA polymerases: the wholo story

Katsuhiko S Murakami, Seth A Darst

Journal:

Current Opinion in Structural Biology

Year:

2003

Language:

english

File:

PDF, 457 KB

english, 2003

2

Marking and Measuring Single Microtubules by PRC1 and Kinesin-4

Subramanian, Radhika, Ti, Shih-Chieh, Tan, Lei, Darst, Seth A., Kapoor, Tarun M.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.89 MB

english, 2013

3

Marking and Measuring Single Microtubules by PRC1 and Kinesin-4

Subramanian, Radhika, Ti, Shih-Chieh, Tan, Lei, Darst, Seth A., Kapoor, Tarun M.

Journal:

Year:

2013

Language:

english

File:

PDF, 59 KB

english, 2013

4

New inhibitors targeting bacterial RNA polymerase

Journal:

Trends in Biochemical Sciences

Year:

2004

Language:

english

File:

PDF, 491 KB

english, 2004

5

Bacterial RNA polymerase

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 558 KB

english, 2001

6

Averaging Data Derived from Images of Helical Structures with Different Symmetries

David DeRosier, , David L. Stokes, Seth A. Darst J

Journal:

Journal of Molecular Biology

Year:

1999

File:

PDF, 394 KB

1999

7

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

Andrey Feklistov, Seth A. Darst

Journal:

Year:

2011

Language:

english

File:

PDF, 1.69 MB

english, 2011

8

Regulation of bacterial RNA polymerase σ factor activity: a structural perspective

Elizabeth A Campbell, Lars F Westblade, Seth A Darst

Journal:

Current Opinion in Microbiology

Year:

2008

Language:

english

File:

PDF, 1.76 MB

english, 2008

9

Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 Å Resolution

Gongyi Zhang, Elizabeth A Campbell, Leonid Minakhin, Catherine Richter, Konstantin Severinov, Seth A Darst

Journal:

Year:

1999

Language:

english

File:

PDF, 947 KB

english, 1999

10

Structural Mechanism for Rifampicin Inhibition of Bacterial RNA Polymerase

Elizabeth A. Campbell, Nataliya Korzheva, Arkady Mustaev, Katsuhiko Murakami, Satish Nair, Alex Goldfarb, Seth A. Darst

Journal:

Year:

2001

Language:

english

File:

PDF, 1.38 MB

english, 2001

11

Three-dimensional structure of yeast RNA polymerase II at 16 Å resolution

Seth A. Darst, Aled M. Edwards, Elizabeth W. Kubalek, Roger D. Kornberg

Journal:

Year:

1991

Language:

english

File:

PDF, 9.47 MB

english, 1991

12

Structural Basis of Transcriptional Pausing in Bacteria

Weixlbaumer, Albert, Leon, Katherine, Landick, Robert, Darst, Seth A.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.84 MB

english, 2013

13

Structure of Microcin J25, a Peptide Inhibitor of Bacterial RNA Polymerase, is a Lassoed Tail

Wilson, Kelly-Anne, Kalkum, Markus, Ottesen, Jennifer, Yuzenkova, Julia, Chait, Brian T., Landick, Robert, Muir, Tom, Severinov, Konstantin, Darst, Seth A.

Journal:

Journal of the American Chemical Society

Year:

2003

Language:

english

File:

PDF, 502 KB

english, 2003

14

Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

Opalka, Natacha, Brown, Jesse, Lane, William J., Twist, Kelly-Anne F., Landick, Robert, Asturias, Francisco J., Darst, Seth A., Joshua-Tor, Leemor

Journal:

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

15

Single-Molecule Real-Time 3D Imaging of the Transcription Cycle by Modulation Interferometry

Wang, Guanshi, Hauver, Jesse, Thomas, Zachary, Darst, Seth A., Pertsinidis, Alexandros

Journal:

Year:

2016

Language:

english

File:

PDF, 4.33 MB

english, 2016

16

RNA polymerase motions during promoter melting

Feklistov, Andrey, Bae, Brian, Hauver, Jesse, Lass-Napiorkowska, Agnieszka, Kalesse, Markus, Glaus, Florian, Altmann, Karl-Heinz, Heyduk, Tomasz, Landick, Robert, Darst, Seth A.

Journal:

Year:

2017

Language:

english

File:

PDF, 773 KB

english, 2017

17

Mechanisms of Transcriptional Pausing in Bacteria

Kang, Jin Young, Mishanina, Tatiana V., Landick, Robert, Darst, Seth A.

Journal:

Journal of Molecular Biology

Year:

2019

Language:

english

File:

PDF, 843 KB

english, 2019

18

Structure of Microcin J25, a Peptide Inhibitor of Bacterial RNA Polymerase, is a Lassoed Tail.

Kelly-Anne Wilson, Markus Kalkum, Jennifer Ottesen, Julia Yuzenkova, Brian T. Chait, Robert Landrick, Tom Kuir, Konstantin Severinov, Seth A. Darst

Journal:

Year:

2004

File:

PDF, 54 KB

2004

19

Myoglobin adsorption onto crosslinked polydimethylsiloxane

Seth A Darst, Channing R Robertson, Jay A Berzofsky

Journal:

Journal of Colloid and Interface Science

Year:

1986

Language:

english

File:

PDF, 715 KB

english, 1986

20

Improved transfer of two-dimensional crystals from the air/water interface to specimen support grids for high-resolution analysis by electron microscopy

Elizabeth W. Kubalek, Roger D. Kornberg, Seth A. Darst

Journal:

Ultramicroscopy

Year:

1991

Language:

english

File:

PDF, 1.26 MB

english, 1991

21

A Full-Length Group 1 Bacterial Sigma Factor Adopts a Compact Structure Incompatible with DNA Binding

Edmund C. Schwartz, Alexander Shekhtman, Kaushik Dutta, Matthew R. Pratt, David Cowburn, Seth Darst, Tom W. Muir

Journal:

Chemistry & Biology

Year:

2008

Language:

english

File:

PDF, 957 KB

english, 2008

22

Region 4 of σ as a target for transcription regulation

Simon L. Dove, Seth A. Darst, Ann Hochschild

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 366 KB

english, 2003

23

A novel method for the production of in vivo-assembled, recombinant Escherichia coli RNA polymerase lacking the α C-terminal domain

Kelly-Anne Twist, Seyyed I. Husnain, Josef D. Franke, Deepti Jain, Elizabeth A. Campbell, Bryce E. Nickels, Mark S. Thomas, Seth A. Darst, Lars F. Westblade

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 751 KB

english, 2011

24

Bovine serum albumin adsorption and desorption rates on solid surfaces with varying surface properties

Yu Ling Cheng, Seth A. Darst, Channing R. Robertson

Journal:

Journal of Colloid and Interface Science

Year:

1987

Language:

english

File:

PDF, 888 KB

english, 1987

25

An altered-specificity DNA-binding mutant of Escherichia coliσ70 facilitates the analysis of σ70 function in vivo

Brian D. Gregory, Bryce E. Nickels, Seth A. Darst, Ann Hochschild

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 336 KB

english, 2005

26

Utilization of variably spaced promoter-like elements by the bacterial RNA polymerase holoenzyme during early elongation

Pukhrambam Grihanjali Devi, Elizabeth A. Campbell, Seth A. Darst, Bryce E. Nickels

Journal:

Molecular Microbiology

Year:

2010

Language:

english

File:

PDF, 657 KB

english, 2010

27

Identification of the gate regions in the primary structure of the secretin pIV

Julian Spagnuolo, Natacha Opalka, Wesley X. Wen, Dragana Gagic, Elodie Chabaud, Pierdomenico Bellini, Matthew D. Bennett, Gillian E. Norris, Seth A. Darst, Marjorie Russel, Jasna Rakonjac

Journal:

Molecular Microbiology

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

28

Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography

Darst, Seth A., Kubalek, Elizabeth W., Kornberg, Roger D.

Journal:

Year:

1989

File:

PDF, 340 KB

1989

29

Crystal structure of the GreA transcript cleavage factor from Escherichia coli

Stebbins, Charles E., Borukhov, Sergei, Orlova, Marianna, Polyakov, Andrey, Goldfarb, Alex, Darst, Seth A.

Journal:

Year:

1995

File:

PDF, 752 KB

1995

30

Epitaxial growth of protein crystals on lipid layers

Edward, Aled M., Darst, Seth A., Hemming, Sally A., Li, Yang, Kornberg, Roger D.

Journal:

Natural Structural Biology

Year:

1994

File:

PDF, 385 KB

1994

31

Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase

Campbell, Elizabeth A, Pavlova, Olga, Zenkin, Nikolay, Leon, Fred, Irschik, Herbert, Jansen, Rolf, Severinov, Konstantin, Darst, Seth A

Journal:

The EMBO Journal

Year:

2005

Language:

english

File:

PDF, 279 KB

english, 2005

32

Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone

Bick, Matthew J., Banik, Jacob J., Darst, Seth A., Brady, Sean F.

Journal:

Year:

2010

Language:

english

File:

PDF, 6.55 MB

english, 2010

33

Catabolite activator protein: DNA binding and transcription activation

Catherine L Lawson, David Swigon, Katsuhiko S Murakami, Seth A Darst, Helen M Berman, Richard H Ebright

Journal:

Current Opinion in Structural Biology

Year:

2004

Language:

english

File:

PDF, 642 KB

english, 2004

34

The bacterial transcription repair coupling factor

Alexandra M Deaconescu, Nigel Savery, Seth A Darst

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.08 MB

english, 2007

35

Mapping protein–ligand interactions by footprinting, a radical idea

Nick Loizos, Seth A Darst

Journal:

Year:

1998

Language:

english

File:

PDF, 340 KB

english, 1998

36

Initiation of transcription-coupled repair characterized at single-molecule resolution

Howan, Kévin, Smith, Abigail J., Westblade, Lars F., Joly, Nicolas, Grange, Wilfried, Zorman, Sylvain, Darst, Seth A., Savery, Nigel J., Strick, Terence R.

Journal:

Year:

2012

Language:

english

File:

PDF, 5.72 MB

english, 2012

37

The Mechanism of Protein Crystal Growth from Lipid Layers

Sally A. Hemming, Alexey Bochkarev, Seth A. Darst, Roger D. Kornberg, Paul Ala, Daniel S.C. Yang, Aled M. Edwards

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 2.45 MB

english, 1995

38

Crystallization of GreA, a Transcript Cleavage Factor from Escherichia coli

Seth A. Darst, Charles E. Stebbins, Sergei Borukhov, Marianna Orlova, Guoha Feng, Robert Landick, Alex Goldfarb

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 231 KB

1994

39

The C-terminal Domain Revealed in the Structure of RNA Polymerase II

Gavin D. Meredith, Wei-Hau Chang, Yang Li, David A. Bushnell, Seth A. Darst, Roger D. Kornberg

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 285 KB

english, 1996

40

Domain Organization of theEscherichia coliRNA Polymerase σ70Subunit

Elena Severinova, Konstantin Severinov, David Fenyö, Michael Marr, Edward N. Brody, Jeffrey W. Roberts, Brian T. Chait, Seth A. Darst

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 414 KB

english, 1996

41

Determinants for Escherichia coli RNA polymerase assembly within the β subunit

Yi Wang, Konstantin Severinov, Nick Loizos, David Fenyö, Ewa Heyduk, Tomasz Heyduk, Brian T Chait, Seth A Darst

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 669 KB

english, 1997

42

Inhibition of Escherichia coli RNA polymerase by bacteriophage T4 AsiA

Elena Severinova, Konstantin Severinov, Seth A Darst

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 415 KB

english, 1998

43

Visualization of the binding site for the transcript cleavage factor GreB on Escherichia coli RNA polymerase

Andrey Polyakov, Catherine Richter, Arun Malhotra, Dmitry Koulich, Sergei Borukhov, Seth A Darst

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 1.26 MB

english, 1998

44

Averaging data derived from images of helical structures with different symmetries

David DeRosier, David L Stokes, Seth A Darst

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 185 KB

english, 1999

45

The anti-σ factor SpoIIAB forms a 2:1 complex with σF, contacting multiple conserved regions of the σ factor

Elizabeth A Campbell, Seth A Darst

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 326 KB

english, 2000

46

Insights intoEscherichia coliRNA Polymerase Structure from a Combination of X-Ray and Electron Crystallography

Seth A. Darst, Andrey Polyakov, Catherine Richter, Gongyi Zhang

Journal:

Journal of Structural Biology

Year:

1998

Language:

english

File:

PDF, 619 KB

english, 1998

47

Two-dimensional and epitaxial crystallization of a mutant form of yeast RNA polymerase II

Seth A. Darst, Elizabeth W. Kubalek, Aled M. Edwards, Roger D. Kornberg

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 2.98 MB

english, 1991

48

Epitaxial growth of protein crystals from two-dimensional crystals on lipid layers

Seth A Darst, Aled M Edwards

Journal:

Current Opinion in Structural Biology

Year:

1995

Language:

english

File:

PDF, 519 KB

english, 1995

49

Structural Basis for Bacterial Transcription-Coupled DNA Repair

Alexandra M. Deaconescu, Anna L. Chambers, Abigail J. Smith, Bryce E. Nickels, Ann Hochschild, Nigel J. Savery, Seth A. Darst

Journal:

Year:

2006

Language:

english

File:

PDF, 1.13 MB

english, 2006

50

Insights into Antiparallel Microtubule Crosslinking by PRC1, a Conserved Nonmotor Microtubule Binding Protein

Radhika Subramanian, Elizabeth M. Wilson-Kubalek, Christopher P. Arthur, Matthew J. Bick, Elizabeth A. Campbell, Seth A. Darst, Ronald A. Milligan, Tarun M. Kapoor

Journal:

Year:

2010

Language:

english

File:

PDF, 1.49 MB

english, 2010